Scaffold Ga0209404_10004456

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10004456
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8021
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004144	Metagenome / Metatranscriptome	451	Y
F007002	Metagenome	360	N
F087292	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100044561	F004144	N/A	CYNRIMRNIIKESRYHLDETGWTYWFHLKHSLVNSYKLIKISFKSLVHGILPFIWKSDAPKGVIILYHEIMKIQHIQKLDKLRKYPKNERYTGNNLNSTE
Ga0209404_100044562	F007002	N/A	MNDIQATILTLLNSYGDIVELDWDFDVDNIIKQLSSNDNWITAPSVSAPQGLSLTGSNNLDLRIKDSKEGEYNDNLKSCPSLIEFFDKWNSLAKCHAVKMDAGTFFRPHRDAYKTTQQMRIFIPLNKTELHEWAFIYDKQLAPFKAGKPYLLNTKKQHGSFAFVDDIYHILMGVYINPHNFKVVTNLLPNCRTH
Ga0209404_100044564	F087292	AGGA	MNSQHYFKKLDKFAVCAFQAQKGCIEVELKSESCGIYHYVFYGSAKIGKAFQSEFDIVKKGDFFDMKDYLYQPRIYEALEDVYIWGFNTFPNQDWDGRLLTDETLTVDTDSVLICLDGKPVVNDITLRRFDYSELSTEKSYDINLNDGVLALFTRNT