Scaffold Ga0209404

Basic Information
Taxon OID	3300027906 Open in IMG/M
Scaffold ID	Ga0209404_10001793 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027906 Open in IMG/M

Scaffold ID

Ga0209404_10001793 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13961
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (29.41%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13961

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (29.41%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Tropical Atlantic Ocean

Coordinates

Lat. (^o)

15.249

Long. (^o)

-20.515

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F021393	Metagenome / Metatranscriptome	219	N
F031648	Metagenome	182	Y
F049929	Metagenome / Metatranscriptome	146	Y
F062151	Metagenome / Metatranscriptome	131	Y
F081741	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000179312	F031648	N/A	MPHKIMVEYNHNVKSFNADTTIKGNHGVIVSVYVSKTGSSGSKCVFKNGTTSSGTEEFTIFSEQQGSYVGINRRFEDGIFADITGNAEYTVVFK
Ga0209404_1000179313	F001625	N/A	MAVTISTSDWTDANVRKTLSWQAALTSKLRVYKVTVTAGGSDAYATNGVSADLKEGRISTLVAVIPEYTDSLYKVEYDKANEKIKLFSVGGSAGAVFAEVANSTSIANKVFEFLVIGY
Ga0209404_1000179315	F021393	N/A	MVEEINSETQVDTVEKSADTLVETEKSFQQTVKSGIDTLTEVVQSIAESQLASTQAIEGLATRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHTDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY
Ga0209404_1000179317	F081741	N/A	ILRFGCIMVEPLLVVVLATVSGAILNTIRGFLHSDEGYDIKKFFGAVIVSGFAGIAISQTIGLSGIDLLGLALIGLTAGFSVDYAVSKAKKVAE
Ga0209404_100017937	F049929	N/A	MVIKSFEIDYNGTKETIEYETDIKYGEMESILSNSIDLSDVSKPKVNIPQYRMNILIKVLRKAPFPVGDTNAVRQLTQSQATEIMKEVMKDYPLAKYLGDWVETFTGSQINTDIDTQSTTSVQ
Ga0209404_100017939	F062151	AGGAGG	MTSTSYTSADLLESILVDNWTSDNVPNVQKAWERRSVGFIDDRRDQIILTPKAENIKYFGLYGNDHWHDVTIDLDIRTYQNDERHADIVSEVIRIIKSKIRGGTDYTDLRVIASYTRNQYMRNMFNHIITISMRISESS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209404_10001793

Overview

Ecosystem & Geography

Associated Families

Sequences