Scaffold Ga0209404_10001589

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10001589
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15120
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005217	Metagenome / Metatranscriptome	408	Y
F007052	Metagenome / Metatranscriptome	359	Y
F012279	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100015891	F005217	N/A	IHTFKVFYSIPNYRIMDEFAFWVLLSRWGLRTSLFGDQDVSQTFLEKKHEAHFNPLILHYTTKDEEKFADWAPKFFCLSRSGEDREDSDLAAGGIYNVNPMMREELAMSMW
Ga0209404_1000158913	F012279	AGG	MTERERVEGMLIENRLEELKENAANLAAMETAVELCRDRKWKLVEELKELGHDFTATTEGMDVVLSAPPSMRF
Ga0209404_1000158914	F007052	GAGG	MENNETYFVAKLFKKGEFLSSEIFESLEEARIWAMKEAKLLISHIEMLRMTNVGDICVKIDKHFFAYELDSEELIKNSVRVI