Scaffold Ga0209415_10202165

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10202165
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1874
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_102021652	F050089	AGGAG	MARQVFVFDAPPGREICDFCSASPTARLYACRNFIVPRTKHAVFQHESIGAWSACDRCAVLIDAGHWSQLTDRAYQRFCKKHGVSRYEEFEVREQLAEIHQLFKEHMIREA
Ga0209415_102021653	F073812	GGAG	MTDPRQELESALSPLAWILNFIWDTFRLMFWFFMSPILIITWCFHHPVEARLYAVSAIPLLWNGNVGTRGLLVFFVLLIASLFGKTLHRICWGIIRLALVAGLIWYIYMIFKLA
Ga0209415_102021654	F006757	GAG	VLPPIKTKFRVALLSLAAYKEIPTEQLIAAARALPGGTRVHLPDRATTIAFLLGTRLVEL