Scaffold Ga0209415_10190490

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10190490
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1959
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004823	Metagenome / Metatranscriptome	422	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y
F055156	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_101904901	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLNVCHQDWEFADWLCALLNELGDKSELLLNEQDWEWLRAIDSPFRRTV
Ga0209415_101904902	F017708	AGGAG	MAKVIEFYIPKNFRKQLRAVAQPQLGKIIEFCSQTKRSA
Ga0209415_101904903	F017965	AGGA	LTDMSEKFGHRDASYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAEYLLHRSSPRPERTCNSYRILVK
Ga0209415_101904904	F055156	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSVGEQL