Scaffold Ga0209415_10072430

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10072430
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4074
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_100724302	F025336	AGGAGG	MVLLTLIAAAEATLFSASQAKRYHARRQQVLMGNAVDSLRALPLVDDYLKRKTAGASRVQVFVASKLAEVCRQAVHTRSFEYLLLHVIRTAIHKRRRKLSISHLG
Ga0209415_100724303	F013913	N/A	MTFTPSLKGAFASGFLLWVLLWAALFKADEIAAAGGFQRWVSSERCLHWIRNHKSTSLLGTELFNYGTHGISDPMGVTFALAGTLVNVLVIFLLLPMRERAKRGRTALNLQP
Ga0209415_100724304	F054526	AGGAG	MSNLQNNPSTPELIEEVIGSGLFSFDDESYFSWQGCEHCADGLGAEVYDLRGYRSLESRELHEFHVCCDCINNQYYGETLTCEQQ
Ga0209415_100724305	F020887	GGAG	MRTTITLYGEVAGIIWMPAVECTKEFHLELNRIPRNSTTRTYLGIAPRSMEITCLRDALLHITNDGDFQSCAITWAVLEVSHYSGDETRRARTVKIRTRVWELRGKGPDADCFREESQ