Scaffold Ga0209415_10030610

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10030610
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7768
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F021893	Metagenome	217	Y
F040993	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_100306102	F014771	AGGAG	MKARGSITQLLRNRRPGYILGEDGCLVAFDESSLQGLDPHALFVGDWVEYEELDPREGRRAAKIKPLIQRAEE
Ga0209415_100306105	F019704	GGAGG	MKRRTRVRELMQREGLRGEIVQLFHSQRTGMIHGDDGYDVTFKEESLVVGLSYGELSLGLKVSYGIFFATGAKLPTGINVQPAVGGPTATTEDGENLLSARASGTGVV
Ga0209415_100306107	F040993	AGGA	MATRRGHGLRLPSAQLRGADHLRSVKDESENRRTRLFRAGRGLARALLLLVILRELGQGLLLEAAGASLVLLLQELVDPTPLFWSVPWEALQLVLSSRRRVNHLWLHRTQDLARESIGRSIKSDGFAMADGFVVIGVGRNKQMVQWTAECACRGMAQEREGASIRQGCRAVRFLVAVWLMTGGLLASSVWRGIDLPGALLIAVLSAAAGHALARPIERMLANWLAIPAWQHQDALGFRLEVEPIEFPEWLWWQGSLGFIVRRVIKEEPGKD
Ga0209415_100306108	F021893	AGGAG	MPDYYTSQQLAQTLGIAEAKITELQTKGLLQPTVKNGRVFFSSPQAHRLRVAIRWAGKDKIDLQEAFARVEERWLAHTNAPKD