NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10020491

Scaffold Ga0209415_10020491


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10020491 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10267
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010241Metagenome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_100204914F010241N/AMTPAKAVWVFRIVHQDTGKPAQGVPVTVLDESGDPAGYWVSEADGTLAIPRRPGPRLRLRVGLRNEEPMELATASLGDEPVDLAAPSFVPAGSLAERPERPTVPPGEPVEVPAHVLYFQRLALFADRATAVGAGSDNVADFFVPAPEPAAVMRYGVVVEIEELWASLGVQWGELLYSVSLTPGDEARLAVLDGRWRRDVEGRERPLQILARMVGTSMLGDLVTALRPELQLEPFSVSTPDLAAAAADSVGLIRERTERMSQALRRRPLGVVDVNAEPAPGGAIRTVRNTTADRVVTFHFFEPLERFRVVVRTPRLRPVLFVPFRLPNVATPDVIRRFGYIFRRTLLDRAMVPLLDLLLSGENADARVSRLIEHVEANLLYYSTAILAAGDPGARLLTLAKMRAPNGVPLTDVIENTVAGRVGNAVAFPLRTMELLPAAWREALAAYEARPPRITEEFAVTIPHPGVWVAAQPHEPMQRVEAQSAAG
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