Scaffold Ga0209415_10012907

Overview

Basic Information

• Taxon OID: 3300027905
• Scaffold ID: Ga0209415_10012907
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13863
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F038767	Metagenome / Metatranscriptome	165	Y
F098478	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_1001290716	F038767	GGAGG	MIPPKIVRMPQFAVRICGVEVSNVTVRVVIGSGQCPVKHELVFEDGLLGTMPLDDTLTIEIWRMKGPLSRQKWQATDVRGLYAELILSGGIDLVGAGTV
Ga0209415_100129077	F098478	GGAGG	MSKAKNGKAVDVKKAAAGDKPEHNGNGKSEKAKDVKIQTFTPANTKLVKRGFVKMFVDFVVKRGSVTTEDLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAK
Ga0209415_100129079	F006757	N/A	MRNLAVLPPIKGKVQTALLNLTAFREISTPDLIAMAQAMPGGTKIQIPDRLTAIVLILGTRPVDTD