Scaffold Ga0209415_10002929

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209415_10002929

Scaffold Ga0209415_10002929

Overview

Basic Information
Taxon OID	3300027905 Open in IMG/M
Scaffold ID	Ga0209415_10002929 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	31910
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (68.18%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019509	Metagenome / Metatranscriptome	229	Y
F049906	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_1000292927	F049906	AGGAG	LKTLTRGLLVLSMLGFAGAAMAESPFDGKWTAEVVRPAPAGNQTLAITLNTKEGKVTGSMLIQGGGESPIDWGIIKGDLITFKVKMPFNDTSAIFVYLGKLDGDQIAFGRRPEDLTLGRLVEFTAKRAK
Ga0209415_100029296	F019509	N/A	MDHLCQYLCSELVTVTYEEQPGEIRQMVANLEEISTESVVVLLDDEPRLGSSISLTVKDRDLFGIIKARVYDATLGWFAIIGLDAASRWRREWFAPKHLLEICECSLEGATHTKARALENTRNTEENVPVNFVVSEV

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