Scaffold Ga0209415

Basic Information
Taxon OID	3300027905 Open in IMG/M
Scaffold ID	Ga0209415_10000729 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027905 Open in IMG/M

Scaffold ID

Ga0209415_10000729 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61679
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (72.73%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

61679

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (72.73%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003400	Metagenome / Metatranscriptome	489	Y
F025334	Metagenome / Metatranscriptome	202	Y
F099579	Metagenome / Metatranscriptome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209415_100007291	F099579	N/A	PYWTGTPNQLYDMFAPVIPIIRNHVPGAKVSTPPVCGGHTSWITSWMTLENTYGRLSDYYGIHVYLLGYTPEVRMGMVQNMLDTKNANGWATTPWMNTETGYETVTFTCSTQYTVEDCSGQLVRWHVLQYAYQGGGGGAYNVGWFTWKSFSSGGYDTYYYTMMQWLTGASFTTSCTNQGTVWSCPLTEASGNMALIVWDTAGNSQYTPASEYVDYKYFNGTYGGATEAMSAGQGTTIGVVPIMFESAQ
Ga0209415_1000072918	F003400	N/A	VRTDILPLCDKHYRTMEFLLAPFSVNYSVEFFRCTDKFCQRCFSESLGYVTPRRDEPPVVSNDQPACDKHGRPMFISSLDRQRNVLRYVCPESGCRETALRG
Ga0209415_100007293	F025334	AGGGGG	MSLKIWAIGAVILSAPSFAKACSSGDCQQGVIAGPYTAAQVAESTSISTSVFPVCLSCTGGSWTGDQIEGIDAQQNIGSQYQFYDAAYDIDANIAVGPTVSGQNAQVLEWVNGQFVQAFDKVSGQPIFTFTGGTTAVPRNVAGLWSSSTQAECQNSSGNVQIIYDRLDNAFVISQRVVYMAGGIHQSAWCIAASSGSDLSSPNTKWYAYEYKMASVIPCVPSSNNCTKGPYYYYFPDWPRIGTWSNGFYITFDLQDPTVHYTEAGFEACQLDRADITQGKASNPMTCYTYTVPSTQRPSLIHSVDVADIDSATGPLGGEPEHFLSVVNPSNAQQGLKGRNWCTSQTTPCTSNQLALFKWGTKGFTGPTFLAVNPYTPGCYNTSKAGQEGDTFCVPEPSTNTNDIGGYGQPTCGDYHTPCVDSLGDRMANRLTYNHLSSSSGPNGQYLTASHVVMESASNQRTGIRYYILTLSNGTASVLVNSGGASGPPDLQDPNGVLYYFMPSAALDQNGNLGIAYTTSGPYCSQCQSPNEPAINFDVLPWNSTSFDVPTLIVQGTGDEENTNRWGEYAATVIDSSDNLTYYGVGEYFNTSQTGTTNCGQPASNCHTWQTRLFRGQF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209415_10000729

Overview

Ecosystem & Geography

Associated Families

Sequences