NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209737_10196467

Scaffold Ga0209737_10196467


Overview

Basic Information
Taxon OID3300027904 Open in IMG/M
Scaffold IDGa0209737_10196467 Open in IMG/M
Source Dataset NameCubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y
F001642Metagenome659Y

Sequences

Protein IDFamilyRBSSequence
Ga0209737_101964672F001642N/AMLYKEIIAVCSQIHTKHINTVCGQNVELLNVKPGGTYSDHWALKG
Ga0209737_101964673F000003AGCAGMLYREIMAFCSEIHTKHINTLCGQNVELLNVKLVVHIVTTEL
Ga0209737_101964674F000003AGCAGMLYREIMAFCSEIHTKHINTLCGQNVELLNVKLVVHIVTTGL
Ga0209737_101964676F000003N/AMLYRKIMAVFSEIHTKHINTLCGHNVELLNVKLVVHIVTTGL
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