Scaffold Ga0209737_10014399

Overview

Basic Information

• Taxon OID: 3300027904
• Scaffold ID: Ga0209737_10014399
• Source Dataset Name: Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6135
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y
F019492	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209737_1001439910	F004007	N/A	MLWIHELIAMLLVEVRGEMSVLPAVTAVLLHYSALDTWTYCNILNTG
Ga0209737_1001439911	F004007	GGA	MLLVQGRGEMSVLPAVTAVLLYHSAMDIWTDCNFVSTV
Ga0209737_1001439912	F008821	N/A	VLWIHGLTAIFLIQGRGEMSVLPAVTVVLLHYSAMDIWPDCNVVSTV
Ga0209737_1001439913	F008821	N/A	VLWIHELTAMLLVQGGGEMSFLPVVTAVLLHHSAMDAWTDCNVVSTG
Ga0209737_1001439914	F004007	GGA	MLLVQGRGELSVLPAVTVVLLHNSALNTWTDGNVGSTG
Ga0209737_1001439916	F008821	N/A	MLWIYELNVMLLVQGRGEMAVLSAVTAVLLHHNAMDTWTDCNIVSTG
Ga0209737_1001439918	F008821	N/A	MLWIHGLTAILLVQGRGEMAVLPAVTAVLLHHSALNKWTDCNVVSTG
Ga0209737_1001439919	F019492	N/A	MLWIHGLTEILLVQGRGEMAVLPAVTVVLLHQSAMDTWTDCNIVSTGYRGNGGSVCSYCSTVTSQCFGYMV
Ga0209737_100143998	F004007	GGA	MFFVQTREEMAVLPAVTAILLRHSAMDTWTDCNVVSTG