Scaffold Ga0209488_10000554

Overview

Basic Information

• Taxon OID: 3300027903
• Scaffold ID: Ga0209488_10000554
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31684
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019009	Metagenome / Metatranscriptome	232	Y
F022503	Metagenome / Metatranscriptome	214	Y
F026653	Metagenome / Metatranscriptome	197	Y
F055974	Metagenome / Metatranscriptome	138	Y
F072557	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209488_1000055410	F022503	AGTAG	VTILRGMGALRHLLIVVVIGVVFRWLWKSSLNEHASVEAGRTVFPPTRAVRILAVLFGVAFTGLFLWSWFAVRKPDEWWVPYLFLGFVALSLCIYPSVLSIEVDGIGSRSWLGRERKIRWEDVTSLRYNTGNKQFTVCANDGRKITHAGFNAEAGLFQNEIRKRTRLPMKLMRPGTWKAETIEVPYEEIETEEQVVDSAL
Ga0209488_1000055425	F055974	GGAGG	VLTKTKQGALVVCLFLFLFVVIGGGLHLNPGGAFLAAATGTPLAIHVFNRRWAGRGAEHNPTLSSRSPGSVRSVGEADVGHPRASETESFVRQ
Ga0209488_1000055436	F026653	AGGA	VLRRLEAFVFFLAMMLAVTLEGACVYWMCGHPRPYATTEGSLDFVGEWTSLALPQGWLLGALLVLIYRVTAMFVPPRRWTDNEFLQNRRAFLRLWRWAMALAAMQGLTLFLGRAAAAL
Ga0209488_1000055437	F072557	AGGAGG	MLRDDLRKRPDLGFRRTVADHLLEPLSPFDANSVRRPQRWFVLSSFVSLAAVGSVVYFNFWN
Ga0209488_100005544	F019009	N/A	MTFVIFHASAMADIPQRDSIRAVCHSRGNMKASRLLWLVWMILTVVRSVTLGQDAPRQPEVTRALLQAKTVYIISGHVRYYKTKGLFKKELVDTTPFEEPCRKNLEKWGRFTLVSDMKGADLVIRAYEKGQSNYVPVMSPGVTGSVNVGQSFVILDVWQPSSKKVIWSASKNDATTWSNNTAIEHLVKKLREDIEEREKSAPKSDGVSKAGSANPQN