Scaffold Ga0209048_10011854

Overview

Basic Information

• Taxon OID: 3300027902
• Scaffold ID: Ga0209048_10011854
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7785
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046997	Metagenome	150	N
F055381	Metagenome	138	N
F058854	Metagenome	134	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209048_100118543	F055381	N/A	MKLLLKLLFILPALAATGSSIREVYLPPWYDNASFQTFELEIKDLPVHRVQLDHPCTLFCTNQVVMVSNGTARARLLIDLKKTPATFPIIVMAPDANGRMTPRQKLICHLSLVPLPIQVEVRGDTFTVTNLTEEPFELERTEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLNPKPGSGGPG
Ga0209048_100118544	F058854	GGA	MWLCVLCLFTSAWKSEAEIIDHLNARWQGCAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNARDNEPLLALWGRIADPRDKPLARLFLRKGRLVWVCPIDAKGDSLFDAPKEVELETRELTAGLWATVDVLINPLPYQQTFGWNLEMNHPQDPAKPSGKPLHLARQLTSADWTLQKIEMPRLHAAWLGQMELLPADTPPAQLRPNILRQ
Ga0209048_100118545	F046997	AGGA	VFTTFAYRTLSLIGCSLALGAAASPVTVGDVRTERDSIPRALARDKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAAAETSAILLTLGEKKLTLHADVLKKSYTACQPTNGLPLYVDRNRRRAPETYVDPEILKGGVNILTPKGTNQVPACLSGEALENYLRLRCDQKLQPGDYWRELHARKLDDEQLARLRYYDYLDTHVALRSVPVYQCMEIRSRNH
Ga0209048_100118548	F063304	N/A	MRLNNSTPDRAVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPANAYSAFAQRTALIGIQPHEWVKRWVTSQRDFFRNKPSDAGYLRLAQRLSGAWPLEPGKDAFQRALGSFLDGIAASTNQSHAVVVQSSLLETFARAIRHQARDLGLDRPAVPPPAMSIC
Ga0209048_100118549	F063278	N/A	MKERYLIIGFQPPTRRISLDSERAESATDAMRAVGGMRKAADVLLAWTAGQMRQMADLLTAMTPQQIAFNRRSAELEERAFRASQTAPPPVRTAGPQRRPFLVISYNPHTEAVHLDTELSDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLAGLTAEQMARNRRAAEQEEKTFYAELTARQ