Scaffold Ga0209048_10001719

Overview

Basic Information

• Taxon OID: 3300027902
• Scaffold ID: Ga0209048_10001719
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22143
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (58.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209048_1000171924	F097281	N/A	MNKQKNPKEPVNLKEQNAAHTFRVTIRDRDHFYKLVNWLNTNVGKGQDKWTMEGRVLKTLKGGKTVSPKVYIFRQDFDPAASLYLSLL
Ga0209048_1000171936	F071209	N/A	MYVPMNELIRDKDTSWTFTHLNIPYHEIAKKGIVIWCVEHLEGRWTMLGGNKFGFEDATDATMFRMQFGFGV
Ga0209048_1000171940	F055453	N/A	MKIKEFLGESATDVVARFYKEAGHEFDKFYNPEDVKYKEKNSKYYDEHFKQWFAEEITPIFLKPNTEPQPEYTNTPKEGKLQSPGYRGLQIARAHAGQPYDHEFQRYEPSPSRMLASRTMDGARNNNGN