Scaffold Ga0209048_10000489

Overview

Basic Information

• Taxon OID: 3300027902
• Scaffold ID: Ga0209048_10000489
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42320
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (59.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002465	Metagenome / Metatranscriptome	557	Y
F006066	Metagenome / Metatranscriptome	382	Y
F016286	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209048_1000048914	F002465	GGAG	MPTNKPPKPDPLQNLTPRRIAEFALEESRLSNVAYRFQLVPRDRVWKNWDRTEFEPNHYKVVALAGVCLEREEVEKAHRTASRALEEIDGILFVVEEPADSIVVRGATGTMEFVRTPTLCAEIMAGSSAAFDRALAALEAAFPGERVAGKIVSEGRS
Ga0209048_1000048923	F006066	N/A	MRRRPGEAPATHRVWVSQDQPLREAPGADGKLYFRIRLEGEPSPEWMRAYRAGLLGLVPEDRDVVMRFEFLGDSVRFAATDAEVGKIRRVLEKRVEAVNGILSGGRSIGS
Ga0209048_1000048931	F016286	GGAGG	VSRDGYRAILSFSKDERFEVAVRGEWKRVEARMDGAPLIKIMRPDLKRVWQIRPTTKKILDAPWTPTDEIVPGYPLEPNFDPQAYADRFGGAIRQIGDDSHGLHPCDRWQMTLPSGDLVTLWVARDLEKLVVKIEHAKKDQSDEYQPFTVIELLDVRVGAASDLFEKPKGYTEVKTYQDLLG