NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209427_10105643

Scaffold Ga0209427_10105643


Overview

Basic Information
Taxon OID3300027901 Open in IMG/M
Scaffold IDGa0209427_10105643 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2507
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018208Metagenome / Metatranscriptome236N
F054048Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0209427_101056431F018208GAGGMKRILEDFEYIYFFKDAFDSKLLGRPYFINEKGFSEEEVKKAKEFIKKNGTKFYTVDDDDLDKTEGYFFSKDVIDFPPLDKMMADSGHTKLYYYENNKWKQL
Ga0209427_101056432F054048AGGMTNINDIIKPLNRIADTLDEVLTLVKKDMEDSKARITAQWDNELDKREVIKKDENFNYSQLELPFPEVE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.