Basic Information | |
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Taxon OID | 3300027900 Open in IMG/M |
Scaffold ID | Ga0209253_10607343 Open in IMG/M |
Source Dataset Name | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 802 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Notre Dame, Indiana, USA | |||||||
Coordinates | Lat. (o) | 41.7 | Long. (o) | -86.23 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006893 | Metagenome | 362 | Y |
F022646 | Metagenome | 213 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209253_106073432 | F022646 | N/A | VQIRKANIINSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKLGNIGKGIRDDKYCIPMCFTCHNLQHQIGELEFFERFNINPILISMKLSIISPCNKINQAKQEGAYNGRINYKEHIRNNKKSSLQS |
Ga0209253_106073433 | F006893 | AGG | MEELTIKNISEITKKVLCNHKLYKDINFFEVPHNKVCLAVIRSITELSYNEIGKAYNKSWFTIYASVKDCQKNGLKSFTNKIIDLV |
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