Scaffold Ga0209253_10284598

Overview

Basic Information

• Taxon OID: 3300027900
• Scaffold ID: Ga0209253_10284598
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F024551	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_102845981	F003714	N/A	ETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTTWVNLNRRGPYRRQK
Ga0209253_102845983	F024551	N/A	MTIIRPDSLPRLWWLFPWSVARQLHKNAVALRQLADTENAINRTLKAEVTRLAHSREHWIAKHDRAYEVAMHNERVIARLEDSITRGAITPDAHPHE
Ga0209253_102845984	F000957	N/A	MSSFRHLDGMVALLSEIYEINERIMTGDICSNKTAIASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGIQYSYELDGFEVAGSQVPRRV