Scaffold Ga0209253_10132185

Overview

Basic Information

• Taxon OID: 3300027900
• Scaffold ID: Ga0209253_10132185
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2030
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002933	Metagenome / Metatranscriptome	519	Y
F040586	Metagenome	161	N
F073255	Metagenome	120	Y
F083916	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_101321851	F083916	N/A	VREFYGIGFTIHNPSERHQQMIAWLKNNAAFCKSEDYVVIWNNLPMWAGTADSAETRALILRGYEEALKREKK
Ga0209253_101321852	F002933	N/A	MIPPLYKWYPMVQPGGEPTKTDALERRAEKLTEDYKQALKMKKVDDKIDALEFELYVKKAERNQLSLEIFTNRKLDIYV
Ga0209253_101321853	F073255	GGA	MYDQKADTQTSEESVNGHQGQADLVGHADGELHPVHLCFGYGNQLYAWPLGQRSGQRRDIQDDFTRFFYSYRRHDWLPEWYQADAK
Ga0209253_101321857	F040586	N/A	QELGGAEWLRKQLDKNAKMPAKYYRRELDAPSKKEVND