Scaffold Ga0209253_10121935

Overview

Basic Information

• Taxon OID: 3300027900
• Scaffold ID: Ga0209253_10121935
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F044446	Metagenome / Metatranscriptome	154	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209253_101219352	F001915	AGG	MDHDWTLAHPLHDVDDIIEMADGMFGKEADGILTRDRNVFRKNVTITATTQLFDKGREFLAVCRQKQEYKKVVIDGFVDYMCTEPKLLAYCWFDRGGYTTYANEEISNAKFHHLDLSLPAKQRVKLIHEMIDQHILWASTWGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWIRTENGLKDLYEKA
Ga0209253_101219353	F012670	AGGA	MKKPKDADILFGEIRPEGSLVTSPEELEKKKHYMKMKRAEKRAMGLATGEQFPKEEKPKPTGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV
Ga0209253_101219355	F099270	AGG	MTTNFLYAQAPNRTGNTSKHTPSKSGGATNVTNTKHGVSGPTGQQGAPKATGDITGRHQKVQVSTHADYCGTIKNDGYMNKSTKNYLG
Ga0209253_101219356	F040590	GGTGG	MTNGLTKNINNKLKGFEEGHKRGQALATAVGKAFNQNPLSDNHLNNINVAAAKKFTVPTLPKNV
Ga0209253_101219357	F044446	AGG	MASYDIAALKEDLPTAKELAQFVYDKTNIALDLVGKPKDEQYQVAKNALEGKKIPSDYQTDLNPYIDRKELIPVDEIKKLPPRPADLPE