Scaffold Ga0209668_10013184

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10013184
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3931
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1001318411	F070109	GAG	VSLTTEQVRSLLKLKAERDYLLEQNLLLSKSDKIASSVIKDQQKSIDAYSIANEQKAQQLVKAQQELYKEAARKESWRSAALIGIPISFVGGIIFNLLF
Ga0209668_1001318412	F077297	N/A	MTHQAKEQIKGAVVIIIAVAICMFMQLMYIRIKDDEKALQGYQRRAERATHVIDSLEATNVQRMQEIAQLNMQIEHNTQIYEANISAIDSLDRNGLKRAMHNLLTSLTGERYPGESND
Ga0209668_1001318413	F047677	N/A	MKWLKSVFSNEGDASSKRVASILALLVCINLSYIGTFTDYKCPEYMFDGLLILAGGGLGLTVIESIFDKKKSNDTPSEGTN
Ga0209668_1001318414	F084221	N/A	MSNHQQQVAEGVTGAVSSILLSVPAWMVDVEFALKIFCLLLSAVASIFTIYKMRKKR
Ga0209668_100131846	F066778	AGTAG	MNHGEVTFKTILMSYTREPNWDKLKPTIDWDEQEDKLAEKLSKYINKNNTVMNQGIVKSQKFVRTWDGPSGAIHYFDLVVESNNGLNEVGQIGVKDMNSPKIAVGATLHYTVEERTGPTGKKSTNFKLQNPMPYANSSTPRGAVNSAPNYRKESPDVQNSISKSVALNNAVLFCKDVKGSKPGDVLDTAEIFLAWLKGEAVEAVEIKAVTNESADDEMPF