Scaffold Ga0209668_10001975

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10001975
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8934
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F052407	Metagenome	142	Y
F060610	Metagenome	132	Y
F061497	Metagenome	131	Y
F065376	Metagenome	127	Y
F079784	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100019751	F052407	N/A	TTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSISPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0209668_1000197515	F065376	N/A	MNAANIENISEFYKALNSTEVLRAQSMIEGAPQIIEDKLTYDMSAESIKAANDAIKHIENNRKMVTLPLDAYKKSIMDVERDATASLKAYIEHRKQMMISYSNELAAKKAEADAKIAQEAADALKSAVTSDMSTIMAKFTDATTTTTLELDHTKNIRISKKAEIVGEVDWMTLLWTLMQAEMFDVQELLRKLPKAMEITNIAEIRGIELTEVKTQVIR
Ga0209668_100019752	F024717	N/A	MATPKEISERIDGLFSEWSGGFTPLYFAVLDMRREMYIRIFGTGKNGGTNQAGQTLPTNPYSPAYAKIKAKNGRPPLELTGFLKRSFATDQTTVILEGFDTAIYTVADEAGKVAGLEKLYGTIFKPTAEEQAAMLQLHADLLVEQISNQISKP
Ga0209668_100019754	F061497	N/A	MIDITLEGGYVTFVTSVSGAIASNVELCEVVDDLSYHLGTNIGVFLINVNDSSINGLTFTDSTKAVNYILNN
Ga0209668_100019758	F079784	N/A	MATRKQVSKPRQVLDIILKYWRPTIGSLVILGSVFALIFKQITTETLAAIVAAMVAAGYIPKSNDNG
Ga0209668_100019759	F060610	N/A	MDDGIDSVQVITTLDAVCVLGIGCKLHTHHQRIEVKPQVIYQSMEKFTIFGRNYCTNQWGQTYELPPIEPMPEPIFMQQTYARDTIQPSTSAFLLAPKPEAKIIIKPRTEYTDYKPTMDGPVMGVLLTFTIYLTAQWAWSSMGAWSNLYSELNQCLRSSS