Scaffold Ga0209668

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10000727 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209668_10000727 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13695
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

13695

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F061533	Metagenome	131	N
F089880	Metagenome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100007273	F015061	N/A	MSEQTPQNETSKTILEAFSFIKCEDEKLNERVHAMGSLLHTAAMMVVRSESRKGEGFEAIKYLELAFLYYKESQFRKRFDKEEEKEESPRIIS
Ga0209668_100007275	F089880	N/A	MKKTKPTLQFISPIIEGEMVSLDKYLLDMAKFSQTEYPGVKITIDHVRKLYQMILKDSSPTDDTPDEVLELFERMREDYEIAKEMLEEVMNAPKIEAEVAPVKAVAVKEEPKSESLALIESVKDGLELSSFTTKFDIGAGMTQCVPRGEVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHEDVVNQLCSNFKKSYSTVSGYARACRAFPTDKRDPMLPFTVYREIGNANFGDAKTNAKKQQELLDAAKNEKLSSTEVRNRVRNEQGKDDKPMSHRHLLGHRYLLLNVGNFSNSEILRNMPEEVQEHQLLIDLGDKSWFDPAEGEWLKFLKEQ
Ga0209668_100007276	F061533	N/A	MSNQLEGIEQKDIIKRVTGKVTKLWEAKTFNGPKGEFVIQGGEIEIDGNTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYDGKNGKVDRDIIKVTATGKVEFDRPSEEPARVASPATPKAIVTDNPEQAIDKIVELHMYIDSLVRVAYKKVTDEETLRSYVSSVFIEANRKGIALSSKKEEPAKVEKLDPTNWAEVLVPSGSMKGKALGSIGKPALTKLYQHYLEKGFDSDFAKCVEQAGNDLNLDAWTLEEEDEDNIPM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209668_10000727

Overview

Ecosystem & Geography

Associated Families

Sequences