Scaffold Ga0209668_10000305

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10000305
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20081
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (15.38%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F019119	Metagenome / Metatranscriptome	231	N
F025233	Metagenome / Metatranscriptome	202	Y
F032245	Metagenome / Metatranscriptome	180	Y
F044374	Metagenome / Metatranscriptome	154	Y
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y
F049561	Metagenome / Metatranscriptome	146	N
F060730	Metagenome / Metatranscriptome	132	Y
F082372	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1000030513	F025233	N/A	MHLLIANIMFVLQLHTGVIIPTDDVDGRTIYSIPSAGIEYAYKAEIIQYLETGVFMYDETMDDPVDPSMVKNK
Ga0209668_1000030520	F049561	AGGAGG	MTKIRVELEETDLFNAIKKIIDHPNRVEIAKTLTTIIAPNERLSSIFFKTYFGGAAPEVLPNGTMITVNPRELSYKANVEGMKKLGLLNISGHATALIKEFKGFGDYTTYIVNFMNVDDNDKTFEDTGFVAYNQVLSVIEEL
Ga0209668_1000030523	F000716	N/A	MYIMEKLKKQVRNYQLYAGKTYVQYESDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQLTIKYSNLIFETLFPNSPMTQFLLADTETDERFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPITLPRLKNETKV
Ga0209668_1000030528	F047578	AGG	MSKWNYMKVICIDSSNKPAKIPIEQWIKQGETYTIIKVVKMGLQDGRYGVLLEEVQMSADCFPYEYYDADRFVPLDERVANMEEEAIKEADLELI
Ga0209668_1000030530	F060730	N/A	MGRMKEIYMRVMHENDGRVPEEMTIADMARMKELEIYNWEEYEREQEKLRLFRVKQENPREITKAAQVRELWEEELKKGQNRRTPKGE
Ga0209668_1000030532	F048842	N/A	MKNKAGVVLITLLPIILWGLALFGEIRCIYKMCTCNWEPIGKAEIVYTVGTFTGAGVVIGYLNIEDK
Ga0209668_1000030536	F082372	N/A	MSEPETGWVSALIKCDLCGHESLSVHHESSDKLECANCGRMSHYEVLEYYTNEEL
Ga0209668_1000030542	F019119	GAG	MTESFLGTQFVTYFDREMEKKITHEMLELSAQISREHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRILEHGEYSKVNQVYWKIAKDYPHEILNHEVFMQTMAAK
Ga0209668_1000030548	F032245	N/A	MQEVFNKLIKAGLSPNAFYVLYCIHNKIVPSDLVNASIEVARLKSGNYITDDLQLSSNSLIFIQEIESYFKKSKKKTSKNLMGDDFLDNIKTYNECFPASKLPSGVYARVNVKSLENAFRWFFETFDYSWETVIQATEKYVEEYSINRYNYMRNSQYFIRKQNTDKTWDSTLATYCDMITQDDYEAPIFFKEKIV
Ga0209668_1000030551	F044374	N/A	MSRKEKEKEFFAHHMDKFRKAQVTDPYFTIKTAFFQKGKYGRQVQLFEGELKRGEDIYIEFIDIMRDALGKETGIEHAFEDRPLFKYKHNPYFAEEYDVKESTNSNGENYFAYTIPLSELMVIMPDGSEITQNLYEKRKAEAPKEQVSLSVFPDFENEFIPKLKEVSLDVEESASDILLRIATEFQKLATKIK