Scaffold Ga0209668_10000099

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10000099
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34157
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (3.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F071219	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100000991	F049410	N/A	NGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWTIIN
Ga0209668_1000009948	F044325	N/A	MKQLIQKLLFGYRSNPAAYIPKGGAKLTHKGGNAEAIHSALVLMQYNIRNAKD
Ga0209668_1000009949	F062749	N/A	MKTKLSLFMWAVAVLFMSFWSVSFAMSGVYYDNSEFVTFTLSFCASLVSAVCGAGFMQQWMKK
Ga0209668_100000995	F042157	N/A	MRYIYTHIQQKTTMNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAESQGLISLKQAFWGGLAATFLLINTKFLTKFTTETPSRTDLINGDGC
Ga0209668_1000009950	F041191	N/A	MWSRVYAAMDEEMKLLYKPTNLTCEFIVPDIEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGERTIQRIGRYEIGELVKCELNWGSYIECKANDGYVFRVAPKCSFPIGYQLYSYAEKDGVEGVKVDINIEIMNLKIN
Ga0209668_1000009953	F049410	GGA	MTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWN
Ga0209668_100000997	F071219	N/A	MIHHNHPDNSIPVIITSITLQAGVWLSDLFVNLDLVGISASLYEFAKLGALCISMWASYRVAIKNKPDDKPKL