Scaffold Ga0209668

Basic Information
Taxon OID	3300027899 Open in IMG/M
Scaffold ID	Ga0209668_10000044 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209668_10000044 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47650
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (10.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

47650

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (10.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021966	Metagenome / Metatranscriptome	216	Y
F032654	Metagenome / Metatranscriptome	179	Y
F036664	Metagenome	169	Y
F063690	Metagenome / Metatranscriptome	129	Y
F065704	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_1000004426	F021966	N/A	MGVHVIHQFPSTIAVHTPHGAGQAILLIDYGLDVNSVWFVRLSGGHLKHYYSDDIRIYDNPMNGEGFDVDIPEDWKQ
Ga0209668_1000004431	F065704	N/A	MGSSWFSNQSKGKNVQDAYNKAVERADDEYGHQEGYSGQINSSAGFRDVTKEWKNSKKSMSQYMDEAMDRLTKHQGAQAICLEEPRENKNKTKSQVEHIVTPGTKKWVLTYIVYQGESRIASAVTKGDAVKRARAYSEKNQCTTTIKMERRLEKDSHALVAKVTYKRASDEKDGRWIFFGWASE
Ga0209668_1000004445	F036664	N/A	MNVQSLIDAIQAEVEFLSTSEGDEIECIGIENLEGILSKYFDFKIKLTQE
Ga0209668_1000004467	F032654	N/A	MKNQFFYTRKELKSGTPENPVYIEFKDSFNMEKVVRSLSIEDDRVLVLLDDIHERAQEVPDVDPRTGKPKGVKRQKNTFQSEIYLDPEDAKRFFELTSI
Ga0209668_1000004475	F063690	N/A	MARIPKTKVYNPQKAEAYVGKGVLKNGGGITPVPNGPLIKKKGPFKGSTLKSGGSVVKVGGQTHKVFKNKKGDVVVDHTAGIPAGKWDKINLTKKAKAKTVKQGVASVRKWHKENPNYNSKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209668_10000044

Overview

Ecosystem & Geography

Associated Families

Sequences