Scaffold Ga0209067_10011304

Overview

Basic Information

• Taxon OID: 3300027898
• Scaffold ID: Ga0209067_10011304
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4693
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F010114	Metagenome / Metatranscriptome	308	Y
F033181	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209067_100113042	F033181	AGGAG	MSFEAAWGFDPDKAIQAQSLSASEIETDKSAYSAEEQRAARIPSDVHAQVYELRRMYRL
Ga0209067_100113044	F010114	GAGG	MTIEFNDEETRLLYNILLEQAAEHLIYANSSEVAERLYKLATRFERSVTTGSVNIA
Ga0209067_100113045	F001596	AGGAG	MSWFHSSTAPVDARNHASPAEIVACFQDQRQLLGKLAFLITGDQATAEQAIVAACEVTLRGNSPFHDWLFEWAKAATITSAISQRAVAIRLCGSEYKARPCNHAEHLLQADAEERAASLNRMLRADGQRVIAELDPLCRAVLVLKVAIRSSIQDCVIRLNVSRAAVLSANCRAMAWLHDCQTTPVETITPLQVPPDNVGTGSGLEQSAHSK