Scaffold Ga0209067

Basic Information
Taxon OID	3300027898 Open in IMG/M
Scaffold ID	Ga0209067_10003857 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209067_10003857 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8524
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8524

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	41.1289	Long. (^o)	-78.4195	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pennsylvania, USA

Coordinates

Lat. (^o)

41.1289

Long. (^o)

-78.4195

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001643	Metagenome / Metatranscriptome	659	Y
F006452	Metagenome / Metatranscriptome	373	Y
F020070	Metagenome	226	Y
F048483	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209067_100038572	F048483	AGGAGG	MCSSILILQAASTSALIVQGACCDICPPVHEKYEAEFNPLHMKWILFDDTKGNSRAQMRWVVDR
Ga0209067_100038573	F020070	GGTGG	MPASNTHVRSASVALSSPDVYRASSVFVFGCVFVVIGAYCFCSSAFAQTSDSRTAEEPSNSWTATTDLKSDDLLPERIPARIIENHRRNGNRTLDQRSVELRGTDGHFEPYQDIERQTLTVDASTVRTTARTFARDVNGVKSLVQVTEEEKHILPGDDSSIVRVTYNPDVNGRIQPVQREIVETKRIGKDVEETNTTVMLSSINGGLAPAFKTREFRKRAANDTVERETTTCLPDVNGKWQLSEIRQNTTTQQAEHRRIDERVFRPDAEGKLGQISRVMSQESESTSGEKRSIEENYSIDVPGTTRDGNLHLVERKASTESSSSTGERATEQKVEQTNPGDPGSGLRVSVLVRGWMVPGPSGEQATVTIRARDSNGNLGIVAVDTTQADRIPTIQIQQTPAEKP
Ga0209067_100038574	F001643	GGAG	MNIPTDTLIDMLYLILAGELAIGASDAAEIEQIQRELQRRGGAQCWSFQTVN
Ga0209067_100038579	F006452	GGA	MQRARMGKSIALIGLVAASLLLCSAHFQPAPKLYRAKPEDLPPWAEQGNFRFIRIDGGQIESWKAERTWWGNKFSPEEKEVLTHIYDRDFEQMLGLLKQAEFNWIWVTWSNGWSLKDEDENRENLKKVIARCHENGIHVSAYLSASNMFRKSAYRDDPETKKYGLWKHGIPMF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209067_10003857

Overview

Ecosystem & Geography

Associated Families

Sequences