Scaffold Ga0209777_10273210

Overview

Basic Information

• Taxon OID: 3300027896
• Scaffold ID: Ga0209777_10273210
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1319
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F017967	Metagenome	237	Y
F028086	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_102732102	F017967	GGA	MGIEYYLKAAVSEYVDKDGAIKKRYATIGIVTRTKKNDLMAKIEMIPLLGMKEGAFWCYLNVPEDKTDKPTNLADMESDVPF
Ga0209777_102732103	F002539	AGGAG	MDSNYIWTASGTDITIRWRQLGWIPPSEIQGYRDKWKYYQNLPLRQLDDAAKEQYEQVLRKAKVMRIK
Ga0209777_102732106	F028086	GGA	MTNEPVPFGGNVKVPSDDCEEAFFAVYPDFFYEGSTALNLWTQAWQAALDHVENKKPLIQLI