Scaffold Ga0209777_10133722

Overview

Basic Information

• Taxon OID: 3300027896
• Scaffold ID: Ga0209777_10133722
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2066
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F034448	Metagenome	174	Y
F089853	Metagenome	108	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_101337222	F034448	N/A	MHVNNYTLPRPAESVLAQCHAVYINDPAFRMWAMKKFCTENNLSLVWSELVDTTDVSALFDEAAAFYFVDPADATFFTLKYK
Ga0209777_101337223	F015302	GGTGG	MSQDNIRSRLAKFKDKIDAKTRDEHYADTAARLDTVIGGDTQHFLRLQRVKNEWDELARAVPVGQGFLTLYDYVKEYYGVKLQFDGDNVSLAYEVVNEKKYVMFVLKFNR
Ga0209777_101337226	F100256	AGGA	MIRVSTADPAFNEAWCNASRALPVHNLERPRQYGARWREAYRCRVDGGDEFPHTWYVFDQDEDYTWFMLRWG
Ga0209777_101337228	F089853	GAGG	MNEIHKRYVASVKAPTTGDGHVAYRGWTPCIEWCEKNIGDGWWYSSEGVFEFVAEADYVLFMLRWS