Scaffold Ga0209777_10037159

Overview

Basic Information

• Taxon OID: 3300027896
• Scaffold ID: Ga0209777_10037159
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4543
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_100371591	F028717	N/A	IILGGNESALAQGQGQANPGDSAEQQINAGAIRKSTTSSILNALSNASGQNFESVEAALSFIARTTAQQNQTVGNVQPVEEPIQQRTGRVTTNDLHEQFSKLQSDLARKDQALREKELDGDIQRSMGDRFDPDLLDYALSKVKSNIQWNSDGTYSIINNKGQERYGMDGSPLTIQGLVQEVAQGNPKLLKQSNLPSGSGLRPGQGGFAGAPHETMPDYAKDPAAFNQWAVKNGLGRNVGLKIMQVSATNSLASQKIL
Ga0209777_100371592	F011761	AGGAG	MAYVLGGSDGENYGFTFAIANFALRAMHESMGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPAGGPTAPWNTGNAAVQNPALSQTSILASPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTQAFADTTNSYTDGTATPVNTTTGFKPTPGNTFYPQSADGFYRVLRLGALELLPAGATTGYTFTSGFTTNSVLELIRFAKQQFKVARMAGSPVIVLDSNGFVTEADVAPGGSGSSLTRLLSELTGGAVSGPSSGGSNLSALGNELLASGKIENIYGCMVMFTTFLQHASRTIAGNATTPCLVGAYFGDSALFTVMKEGLQIKLGEVPGGLQNWLTGVGYFGSGVGDQRRGGAINIVQDA
Ga0209777_100371593	F002260	AGGA	MSVPYQRISNATVEDIRFYDPAAYRRAEALHIDWAPYFKVGSQEWLYKLEFGWWNKYCDTVLGAYYYSNLPNGALISSFNPSLLIKSDQTLIRLDVFGAVMVFYESLVTEVSNMNDVDRQNYDFAKDRCDREWIKALELMNFYNLYGNSPNGPTTKLEENWTADVDYFNGDRRFF
Ga0209777_100371596	F003807	AGGA	MNDLNSVWLKTNEEKLRSLLGDEAKQLPMLANMEATIKQMKAKQAFRIALLNQLLEEADPGNSD