Scaffold Ga0209777_10001332

Overview

Basic Information

• Taxon OID: 3300027896
• Scaffold ID: Ga0209777_10001332
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36398
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (71.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_1000133220	F097281	GAG	MINKNTPQEVVNLKEQNAAHTFRVTIRDRDHFYKLIKWLNENVGKGQENWTMEGRVLKTLKTGKSVTPKIYIFKEDFDASASLYLSLL
Ga0209777_1000133229	F071209	AGG	MDKNTYVPMNELIIDKEKSWTFTNISLSYSEIASKGIVVWCINNLEGRWTMLGGNKFGFEDAGDATMFKIQFGFGY
Ga0209777_1000133232	F055453	N/A	MKIRDILNEDATCSVARFYKEASKDYERFYNSEVSKYKGKNSDYYDEYFKDWFDNEQVPVFTKPVSKPQKEYNTVPQGTKLQSPGYRGLQYALAAAGLPYNHGVQRYRTDPARAVASQTMDGARNANGQ