Scaffold Ga0209777_10000728

Overview

Basic Information

• Taxon OID: 3300027896
• Scaffold ID: Ga0209777_10000728
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51487
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (28.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F072994	Metagenome / Metatranscriptome	120	Y
F089761	Metagenome	108	Y
F091224	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_1000072819	F072994	N/A	MITLTSPITISPSPVNGKAIAPTTLTNIDYSVSYDNQQQQAIARIKGVNVSVILWNQHTTPPYSSIGQFTDADTDARLSDLLNVKGGNIEIEKAILALFPQPHKKK
Ga0209777_1000072828	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLAASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLQPNYTPQYTPDCYVCSDVITEPI
Ga0209777_1000072832	F030662	N/A	MKLKNPNDAIPGGLWYQYSDDKGNNYRVNGMDLTFGRQFIQKIKSDMTNKNVAIPENLDYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPACQKRREALNNINR
Ga0209777_1000072833	F048735	AGG	MEYNGLTLDLPKDTTYGLSFFENVPQFIRELTAYRLTRGEFGRRERIKKGIKLDECGLLNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNDNDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAAYGKDASIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVNRYTHKWNTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTVQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIKGCDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGSNDTGRKVGFYLGTREYNSSVGEVFEESIAIQLVKDCVEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTERRISSLDKRTAKEAYDRRVTESWFQVHTAMSTQSLLGIDVDKHTLMVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFSFEEEQESLDILEIRDWEERLIHSKHNAQEQVENDEWGYGSSGVDEDGF
Ga0209777_1000072844	F089761	N/A	MTLRYPDSDFTRPSIMLLRSLAHELGLNATKDPGGYGGLKMERKRLSEALKENIDDDRLSDWDRDMIRGLE
Ga0209777_100007286	F038058	N/A	MASHGVQYTVDKTERGVVSDSVVPQPMQKVQIRNDIATIRAYKDARTSRIKAIGEANQRVFSVGGPANESGMGKNANPFKADWI
Ga0209777_1000072872	F091224	AGGA	MRSPIDKILNELGMETPDLAPINKQEALEMGLIKGQDKPKKCSCGKSAYSSESKCDAAIKHRLKQGFGGTGFLRAYECDVERGNWHMSSVNHKNKL
Ga0209777_1000072875	F039455	GAG	MASVHVNAGRYGDIIAFLPVLLNEYKETGVKPRLVVAKEYADILDGVSYVDPLVWDGAFEDVAGAIQFAKQFADDVKTSQVVGISDVIVSQVYGNSHIPKIVCDSFQKDAWKLAEKLELWPSQPPLLFDRRDKKREKKLYKYIPTLKPWLVVSTGGVSSPFPYRDLLWEILNHSLPEFHIVDLAKIKAERMYDLLGIMDHPNTAAMILTDSGPLHLSYASKKPVHALVADSPSMWYGAAWRPSYASYTRYKNFPRDVTRILDLIRNPPAKPKYPNIIHVYQRTPWSTGEEKRRNEVAKQTWDKIGWVDCGLDDSCFVRHSGNVIPNETKNIPMIKDMIRMACIGRKDTDLIVLTNTDTCVASNLLERLTGSFPAYAYRYDFKKLDRPIRDDQIALGKKYQGCDLFSFRVGWWRRNHSLFPDMVLGRHSWDKIMRELFKIAGGREIDSLIYHERHPSAWENPSNLNNDPSNLRNAKLAREWLQERKIPLEELEFLNYEGRFKKPAKKR