NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209777_10000728

Scaffold Ga0209777_10000728


Overview

Basic Information
Taxon OID3300027896 Open in IMG/M
Scaffold IDGa0209777_10000728 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51487
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (28.21%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030662Metagenome184Y
F038058Metagenome166Y
F039455Metagenome163Y
F048735Metagenome147N
F055388Metagenome / Metatranscriptome138N
F072994Metagenome / Metatranscriptome120Y
F089761Metagenome108Y
F091224Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209777_1000072819F072994N/AMITLTSPITISPSPVNGKAIAPTTLTNIDYSVSYDNQQQQAIARIKGVNVSVILWNQHTTPPYSSIGQFTDADTDARLSDLLNVKGGNIEIEKAILALFPQPHKKK
Ga0209777_1000072828F055388N/AMAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLAASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLQPNYTPQYTPDCYVCSDVITEPI
Ga0209777_1000072832F030662N/AMKLKNPNDAIPGGLWYQYSDDKGNNYRVNGMDLTFGRQFIQKIKSDMTNKNVAIPENLDYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPACQKRREALNNINR
Ga0209777_1000072833F048735AGGMEYNGLTLDLPKDTTYGLSFFENVPQFIRELTAYRLTRGEFGRRERIKKGIKLDECGLLNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNDNDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAAYGKDASIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVNRYTHKWNTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTVQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIKGCDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGSNDTGRKVGFYLGTREYNSSVGEVFEESIAIQLVKDCVEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTERRISSLDKRTAKEAYDRRVTESWFQVHTAMSTQSLLGIDVDKHTLMVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFSFEEEQESLDILEIRDWEERLIHSKHNAQEQVENDEWGYGSSGVDEDGF
Ga0209777_1000072844F089761N/AMTLRYPDSDFTRPSIMLLRSLAHELGLNATKDPGGYGGLKMERKRLSEALKENIDDDRLSDWDRDMIRGLE
Ga0209777_100007286F038058N/AMASHGVQYTVDKTERGVVSDSVVPQPMQKVQIRNDIATIRAYKDARTSRIKAIGEANQRVFSVGGPANESGMGKNANPFKADWI
Ga0209777_1000072872F091224AGGAMRSPIDKILNELGMETPDLAPINKQEALEMGLIKGQDKPKKCSCGKSAYSSESKCDAAIKHRLKQGFGGTGFLRAYECDVERGNWHMSSVNHKNKL
Ga0209777_1000072875F039455GAGMASVHVNAGRYGDIIAFLPVLLNEYKETGVKPRLVVAKEYADILDGVSYVDPLVWDGAFEDVAGAIQFAKQFADDVKTSQVVGISDVIVSQVYGNSHIPKIVCDSFQKDAWKLAEKLELWPSQPPLLFDRRDKKREKKLYKYIPTLKPWLVVSTGGVSSPFPYRDLLWEILNHSLPEFHIVDLAKIKAERMYDLLGIMDHPNTAAMILTDSGPLHLSYASKKPVHALVADSPSMWYGAAWRPSYASYTRYKNFPRDVTRILDLIRNPPAKPKYPNIIHVYQRTPWSTGEEKRRNEVAKQTWDKIGWVDCGLDDSCFVRHSGNVIPNETKNIPMIKDMIRMACIGRKDTDLIVLTNTDTCVASNLLERLTGSFPAYAYRYDFKKLDRPIRDDQIALGKKYQGCDLFSFRVGWWRRNHSLFPDMVLGRHSWDKIMRELFKIAGGREIDSLIYHERHPSAWENPSNLNNDPSNLRNAKLAREWLQERKIPLEELEFLNYEGRFKKPAKKR

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