Scaffold Ga0209624

Basic Information
Taxon OID	3300027895 Open in IMG/M
Scaffold ID	Ga0209624_10001932 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027895 Open in IMG/M

Scaffold ID

Ga0209624_10001932 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15748
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15748

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (80.95%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000612	Metagenome / Metatranscriptome	985	Y
F019380	Metagenome	230	Y
F023459	Metagenome / Metatranscriptome	210	Y
F025559	Metagenome / Metatranscriptome	201	Y
F054232	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_100019321	F000612	N/A	MISILLISPEGLYWVTPVPSTALTFTADDRTSTLEMTNVLIIDQPRWPAIDAETTPAFMDFKLVFKANAESVKYEDPSRQYRFEGFKAAAQLEATIRVPSIDFTFKTDELQTSSSDFAVMGTEVNGKYYEAAKA
Ga0209624_1000193213	F025559	GGGGG	MEPILYSLRAVLWGTLIVALSLPVFAQIPAAPDDSGFPSGRKALNFPATVQTPAVITRPVFEFRGIRIGDEMKGAERKFLALKALSLSSNPGLCGSDGINRIDTCTDVLDTGEYVNMTMLDRRVAQIYVSTDRRTQGNTYNSYVVALSTVR
Ga0209624_1000193215	F023459	AGGA	MLVTQKLLGLPWISVRDRFPLDGHECALVCYAPDSCEPKRGIGYRLNGNWRIQDSALARCDVRAWLELPLSPFNL
Ga0209624_1000193216	F019380	N/A	MITTTHLTLVLLVGIASAQHCRKIDIDKSSGFCTVPDPTLTPGQMDASLGCVSNTDCPHSVTNAEKNTILAAYGYPAATKNSSGEFDHWFPHWRGGSDGPKNVWFEPHAGKYGSFAKDKVEAVLWRAVCVNKTMTLDQAKAVTEEMDETTPATLMSSSFAGCA
Ga0209624_100019329	F054232	AGG	MRWILVCLGSLATGILAIVLSLALLLVSLFIYDRYIPGIASNGSVGWGPVSIFGRWVIGIPLLISGLGCSSGFWFLNKRLHR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209624_10001932

Overview

Ecosystem & Geography

Associated Families

Sequences