Scaffold Ga0209624

Basic Information
Taxon OID	3300027895 Open in IMG/M
Scaffold ID	Ga0209624_10000318 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027895 Open in IMG/M

Scaffold ID

Ga0209624_10000318 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42689
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (90.38%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42689

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (90.38%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000419	Metagenome / Metatranscriptome	1160	Y
F001010	Metagenome / Metatranscriptome	807	Y
F002004	Metagenome / Metatranscriptome	605	Y
F002288	Metagenome / Metatranscriptome	574	Y
F002929	Metagenome / Metatranscriptome	520	Y
F004032	Metagenome / Metatranscriptome	456	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_1000031834	F002004	GAG	MRKTPNSSRRLDEHISRALNKIKKPSTAEEITELLNRDLEPEDRPFQTKEVAEWLRNTGDTALTLYWSRARPRR
Ga0209624_1000031835	F001010	AGGA	MQNTGDPRVRGEIVAIIEHVLSDRPGEWRVSIVGSHANDNWELKVEGPEGFERSYTLVGGSGEHEPAAIGNLVVKLLPARKP
Ga0209624_1000031839	F002288	GGA	MGEGDGVHKRRMFRWPKEARELVREYKERISRSQEHNETGRRMLVTKLAAISGNPRDACLRFLRELGVHQKRPYREWTKPEQQRLLDLIITMPVEEAAKILRRPAGSVRSRLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKANIIHPDDFCQFVKEHGRAVASRRLSYDALWFVQNYVFPPSHAELLSVRGTYKRHDPDDATDPNTESESASGSEESGGQEG
Ga0209624_1000031845	F000419	GGGGG	MAINSVRTRDGSDDSIRFQPMERLKLYLFGATVLFASFGMGEAVYRLLFSEFDGITDRIPIEVLFGLVFAWLATKFGGGVYRNRKERSARLNFIWARNHQIRGALEGITPLAHPSKNQQSIRVIREEVERIEWALKEILPG
Ga0209624_1000031850	F004032	AGGGGG	MNTGSSKSLDSGVWRDLYKAALFEVDSARLPERIAQAEEALVVRARELFHIAGDNIEEEQALDDTMYALRALRNTSQTSNRTPHRSEAA
Ga0209624_1000031851	F002929	AGG	MSQSFRAVKEIWNAHSSCFIEPEKLMVLLHDLAARVDTASDEHEYGDNQVVWLENGRKVLDYMEADERFSPASFKDSMEEQGIAVNQNNLIALIDNMRSLSKQWRSSIGKHGELVFYIDACLTR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209624_10000318

Overview

Ecosystem & Geography

Associated Families

Sequences