Scaffold Ga0209624

Basic Information
Taxon OID	3300027895 Open in IMG/M
Scaffold ID	Ga0209624_10000062 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027895 Open in IMG/M

Scaffold ID

Ga0209624_10000062 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	102171
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

102171

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

77 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F006104	Metagenome / Metatranscriptome	381	Y
F006517	Metagenome / Metatranscriptome	371	Y
F008704	Metagenome / Metatranscriptome	329	Y
F009977	Metagenome / Metatranscriptome	310	Y
F051804	Metagenome / Metatranscriptome	143	Y
F069867	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_100000621	F051804	N/A	TTLLIEVLGPMDASVKRIRFVEDILRNCIRTLDRDFRASKFPQMKGFSLKPEPKRRRKGK
Ga0209624_1000006213	F008704	AGGAGG	MEFVHVFVLTSLALDRSGDVKSKNVAVTFDLFEAEDHRNKGVENDYEMFVVPCDWRENAAQSELISTMREFRAMVKEMQDAALRTG
Ga0209624_100000622	F069867	AGGA	MPHPVHEYPEVIGKTVAKITVTNESDWRNITVKFTDNTAFHVAIRPFVQMEPEHVDWTTGDARILRSYPFVREKGK
Ga0209624_1000006222	F000175	AGG	VDEGRKRVLLIAASILAARKLAQYDGGKRVPATVAAISDAVRWAEEIMVEIDRRWPSKER
Ga0209624_1000006252	F006517	N/A	MLPRVEYSVAVPVPVDAACKAFQDLERLLHRGIYNEASWVEGKPWQVGSRILYVTIRPVATSISAVVTSISPPRAVSLRNHALGVTAEQLVSFRPDLKGGTRIRMAMNLVGKSTELSESAVHDAVTFIVQDALDTVADLCRRCPS
Ga0209624_1000006264	F006104	AGGAGG	MNHVARLQLVGRVTYYLGWLSLLCGGLVHINIARGLFAAMSLSQRNLFEVAVVCFVISMASEIRARDAESKDMSGGLRKAA
Ga0209624_1000006275	F009977	GGAGG	MNLTQWFSQHAISFTLILAYIPLIATVVTTIVSLVLVRATLRYSEASDRSLALAREQFEREWAPELHIKMERLSAREAKVYATNLAKISVLMQMLQLRKLSMAVPSLRCFLNEPLVGGTTWSDDLGKRFFACTGEAYVGQIAVSITFYAAGRMYRTDWFRFQVQVRDGQLLKLDPVNISARRVQTLEPQKGASTRRQLVRDVVGDVAESSQDPATAVSRER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209624_10000062

Overview

Ecosystem & Geography

Associated Families

Sequences