Scaffold Ga0209624_10000004

Overview

Basic Information

• Taxon OID: 3300027895
• Scaffold ID: Ga0209624_10000004
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 323935
• Total Scaffold Genes: 293
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 206 (70.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F000410	Metagenome / Metatranscriptome	1170	Y
F000548	Metagenome / Metatranscriptome	1036	Y
F001063	Metagenome / Metatranscriptome	789	Y
F002781	Metagenome / Metatranscriptome	530	Y
F008094	Metagenome / Metatranscriptome	339	Y
F052072	Metagenome / Metatranscriptome	143	Y
F062016	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209624_10000004174	F000548	AGG	MAEKDSSLRWIGIPARAFAMTFLFTLLSFAIALLLSILGTVVYSQVKHVAPDLTFAYRHIAFPFAITAGAIVLVLSLGMEIRNYRQRKTLDDIERVS
Ga0209624_10000004207	F008094	AGGAGG	MGTTARVFRRLSEFRFRCFSACLFCLPAIFSFTILAQTNPPPADPHEMVTREPRTLTKPGDRSAALDLLDRARQNYNLHDISTPYALKVSFETSGTAQYEGEWTMEQLSDGGSHWRWTAQLGDAQLIQIGADDRVFSTNPSEPVPLRVQLVRSVLLRPVVQSPGAFEVRARDVERDGKRMSCLLLSYSLPPNPAPRSWVEREDCIDPATGLLQVWSEAPGIYAIYDYAGATEFHGHTLPRQISIFEDGRLAVQVRVESLKDEPDLDPNLFRPTPEMLDAGEAFALAAPRRLPLRVDPSDGPTSSFFQPVIVHATIDAQDGSVLDAEALQTSDRDLSRTALDMVRSTAFEPSGFQQEIFVNVQFHFPAVRFGGPPIFHSSIRWVNLDHHGKFPPVRHPPPHPGK
Ga0209624_10000004241	F000410	GAG	MTRKLVWIEQERFRGFGCSECWWRFRASAVAAGESLDEMMRNFELQRDKEFASHVCRDHAEAST
Ga0209624_10000004252	F052072	AGGAG	MKTIFKLATLTLMIFAVSGYGFSASKAENLVRGIIGPVSSNVSWSGYTVIAQVPGAGLIPVTSTTTVFYLGFTAGAEADVSNMVLYTTARGSSTITAVTPVTLGGISNPMIDLASATVCPVIEISSFNPCIVRLDPTKITLSALSDYYLAVFFTASDSNNSSIGLTEPQFQQSSLRGTYISGDETRLTVGATIPSSLSFSGQPYSLMYVMTN
Ga0209624_10000004253	F062016	GGAG	MNTFYKLATLTLMMTLLAVSAFAQEPVPATALANLTEGQGVVASSGNQAWDGLSEFVLIPGASLMGASSTTTALYIGFTGGSEADIGNMVLYETPRNGSTVLKVTKVLLGGSASPSINLTSTSVCPIQPVSATNPCIVRLDTVKLALSPLDDYYFTVYFTLDTNNEKISGLGQSISPGALSGWFLYGDQTRVGVKGALPTNENNDQAPFFLAYITNQ
Ga0209624_1000000463	F002781	N/A	MLGTNWHKALLLFLWISPHVLLVVLAAVIWKRRLYSEFPCFFAYVLFRIAVFILLFTLYWFQGIGGPLYAYAFSATLMLIIALGFGVIDEVSQELFRESLFLKASARRFLQCVAGLLFAVGVLLAVYAPGNNSVKWHAGVSVVNRGAAMIQCGLLLSLLLFSRFLGLSWRRPAFGITLGLGILASVDVAASALRAEFTSNAARELLNLLTTGTYLVCVSIWMRYLGAPEAVPAPPTVVPHDEVEIWNRELQHLLKH
Ga0209624_1000000477	F000078	GAGG	LDSLYCLRCSRELEAGQKSVAVYLFAQTVGVRPRQKSSAQRICFCPQCSVSLAMGPAPEGALNLAAWQMIRDIVGADPALTEAAWDSLHGVEEGLLPSTGLATGTNGNAHPARAGGYFEF
Ga0209624_1000000496	F001063	GGAGG	MEAMLQGLVIIGGLTFSLAASLLIEELIFGQIVRTAFARRPAVPNPVRHHAAKN