Scaffold Ga0209068_10008742

Overview

Basic Information

• Taxon OID: 3300027894
• Scaffold ID: Ga0209068_10008742
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4781
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011236	Metagenome / Metatranscriptome	293	Y
F017381	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209068_100087424	F017381	GAG	MANFPQLTRRTLRAPRVNLWGTASASIQLENGRELWAKTLRISITGGLLELATYLDEGVTVKLTLHLGARTVRGKAATLFPMRAAQGFLQPFRFTDLREEECRSLETEIRELLKQTTPFARGRTSLRPSQFLHES
Ga0209068_100087425	F011236	N/A	MDGLSQLHAQVRAPRVHLADFTPAVLRFQDGQRASGELQVLSVTGGLLALPSPLGQGSRVKLMFLTHGGAVLGAAEMLSPVTSTQQPFRFVSLPVDDRRRLGAAIQSSLNVKVANQDAVEQKWMEKLRAASSREQQPRGRLFRFALGAAALGIFALGCVLYVLQVHLLK