Scaffold Ga0209068_10005702

Overview

Basic Information

• Taxon OID: 3300027894
• Scaffold ID: Ga0209068_10005702
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5874
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025841	Metagenome / Metatranscriptome	200	Y
F026995	Metagenome / Metatranscriptome	196	Y
F071706	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209068_1000570211	F071706	AGGAGG	MNDVELLALGDTLARTSKVLRPGEHVAFGDYLARVLRSEAQIAALFGETAVQVSVDGRPVEGPESAVPVTADSRVVLYRRQGPALDVLTRGVVRRICLN
Ga0209068_100057024	F025841	GGA	VKRRILAGIVTALGLGLLAGCAAGRPTSLIRLLQGDEVLTAHCEAQPPESCTPVRVTGDPRDEEAWGFRARPAVNALWKEPEVFYAVGDRTQCDRVRAVLGTPTEECWGPVYFRRE
Ga0209068_100057025	F026995	GGA	MTYSLVVSLLLAGVGGVLWIEGGPHPRTRGAWLLLVGILIVSALPALLCWLLC