Scaffold Ga0209068_10000854

Overview

Basic Information

• Taxon OID: 3300027894
• Scaffold ID: Ga0209068_10000854
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15646
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002143	Metagenome / Metatranscriptome	590	Y
F025584	Metagenome / Metatranscriptome	201	Y
F035065	Metagenome / Metatranscriptome	173	Y
F037102	Metagenome / Metatranscriptome	168	Y
F048436	Metagenome	148	Y
F095928	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209068_1000085410	F037102	AGGAGG	MNERAPDLTQQVLHPAMHRKLLLRAAELVAMGWTRGTAARDASGQKVRSTAPQATAWCVVGAVDRALYELWAIDVYALLGLDVDAYDSAPCPVELLRALRRPLQCVLGRRDLACWNDHGCAGPAAAEQLFREAAAMAARS
Ga0209068_1000085411	F035065	GGAGG	MTDREVEAISDFLRHFGSFGCRQICVRRTEPKPRTPEDVGRFVLASLAAWRAEGLDAERLYKVATIAIHFDPYKLPGIICMPACCRPWGEIEPACPLGPGRPLTGAQLQQALLRAVPIGSPQGPGAPLPDDLDEDLKRTGLAA
Ga0209068_1000085412	F025584	GAGG	VGDPRLDEPRRWGAFWIHHEAEELRVHHRATIPAGHARALVVTLLASGRVPPRQATLFDSESAHARPGLERFWGTTCRCDAVVYLILFINERCVVLALSG
Ga0209068_1000085413	F095928	GAGG	VVKRTQGGSDFDLDRLVALCPACHAQTDAPYERGRLVITPLGQGQFTITVVRGADKWATR
Ga0209068_1000085414	F002143	N/A	VAHTPDPNEAIQRFLGQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSTLAQVGLAKATVVAPAIERFEEWRTWLQCASELSTVLLQAKVSEALDALPRGREPAPPGERFRRDVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAAKRPRGPSAASNPSVCPRGQNSI
Ga0209068_1000085416	F048436	AGGAGG	MSSLKRWRRVGQGQFHKWDQAGEEFEGTWRGAHDGRYGPLGTLETSEGLITFPLPAALLDRLRRVGEGAEVLIQYTGMHTSKAGRAFKGFEVYVAGDGALAEPVQHAGSSRQAESPVADGDPKEL