Scaffold Ga0209068

Basic Information
Taxon OID	3300027894 Open in IMG/M
Scaffold ID	Ga0209068_10000793 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209068_10000793 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16257
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16257

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	41.1289	Long. (^o)	-78.4195	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pennsylvania, USA

Coordinates

Lat. (^o)

41.1289

Long. (^o)

-78.4195

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001643	Metagenome / Metatranscriptome	659	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006399	Metagenome / Metatranscriptome	374	Y
F015384	Metagenome / Metatranscriptome	255	Y
F020070	Metagenome	226	Y
F055156	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209068_100007931	F015384	AGGAG	MSWFHSSTAAVNARNQASPAEIVACFQDQRNVLGRLALLITGDQARADQAVVQACEITLQGNSPFRDWLLEWAKAATIASAISHGTEAIRICEAAYKDQRCP
Ga0209068_1000079314	F020070	GGAGG	MPASNTYVRSASVALPSADSCRASSIVAFGCVLVVIGAYCFCPSVFAQTSDSQSAEEPAKSWTATTDLKSDDLIPQRIPMRIIESHSQNGNRTLDQRSVEIRGSDGHFKPYQDIEKETLQVDAATVRTTTRTFGQDANGRKALVQATEEEKHILPGEGSNIARATYNPDVNGRLQAVQREIVETKRLGTDTEETNVTVMLPSVNGGLAPAFKTYERRKRAANDTVETEKTTWFLDVNGNWQVREVRQATTRQEGTNRTTEERVSRLDSEGKLGEASQVVSQESESTSGEKRSVVETYSIDVPGATRDGSLHLVERKTSTERSSSTGERATEQKVEQTNPGDPGSGLRVSVLVDGRTVPGPSGEQSTVTIRARDSNGKFGIVSVDTTKSDRIPTVQVQQTPAEKP
Ga0209068_1000079315	F001643	GGAG	MLGELMNIPTDTLIDMLYIILAGEVAISASAAAEIEQIQRELQSRGGEQCWTFQTVN
Ga0209068_100007932	F055156	GAGG	MFRAEIQWLASGPSLKLEGRLVANGAEQASCLVTKMAA
Ga0209068_100007933	F006399	GGA	MATPALNSQVQSLVAEYGVFWQSWPQFEQTHGERRLVGFEVELIGFHASDLNHLDPACPACRHVRSVLLAIVDAMPRETSFRRNYLTYNIDSHSNSILCLPALGNRSAVSVSIYVFWNRSNGQSFETDLLSEIKAFLNGWGIHQR
Ga0209068_100007935	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLSVCNQNVEFANWLCALLNELGQKSELLLNEQDWEWLNANDRTFRRAAQHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209068_10000793

Overview

Ecosystem & Geography

Associated Families

Sequences