Scaffold Ga0209068_10000189

Overview

Basic Information

• Taxon OID: 3300027894
• Scaffold ID: Ga0209068_10000189
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37297
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007201	Metagenome / Metatranscriptome	356	Y
F011041	Metagenome / Metatranscriptome	296	Y
F042601	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209068_1000018910	F007201	AGGAG	VADELKKKKSRWLWPLGVTATGLTGAAVVLFRGCWHSKMSWPVRVHGYTYQVCTGCGIKRLFDEKAFCAYGPYRYDLKGLIAWDRAQHDDAYPQEQRPAS
Ga0209068_1000018914	F011041	N/A	MPRRQVALILALLCSTVACSPRDFLTRRLATDLIAGSDTFKMTQLFWLRTGVISNKDYSSPEYLVLRRHGWITGSGVACPPDLAFPPCWDVVITPLGVDALRDWVAATAASSQYISVPVAQREMLGVTGIRRNGNSADVDFQWRWSAVNEVGAALYAKGTEYNSTVGFIHYDDGWRVIEGNALKSSLALGEALKNAEPVQ
Ga0209068_100001893	F042601	AGG	VQWNPEPAAARSFLRGGASLIAAAALVLILLVWLPAYRWFFLGSLGIGVIVAAILYLWNRYKPVKAEEVENKRPLGLG