Scaffold Ga0209550_10180505

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10180505
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F038241	Metagenome / Metatranscriptome	166	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_101805052	F000868	GAGG	MSDPHGIINPYRKGGSMSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQLFADYRFAEMADNNYLKGRFNLFYDLKPGDQYYLEHEEE
Ga0209550_101805053	F038241	AGGAGG	MLGYTKEDLDQMSNAVHDAKLFYIMKSDVEQVDQDPLVEGLLKANDFLQGLWAEGYFD
Ga0209550_101805054	F084239	GGAGG	LTKSSYFLEYMKIHEISLMQDLEKIDYVNDHHFYRCKEAEILNTRHLLSVATDIMNNSNERYE
Ga0209550_101805057	F000441	AGGAGG	MKMSDVYINDQLNKAQKLLWGGSETENIEAHNIIAKLIKDRIEQTDLS