Scaffold Ga0209550_10174441

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10174441
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1500
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F051686	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_101744413	F001688	GGAG	MWKYLWTELRLMLKTVTPIQAVTHELLHAEHALLQAESGVEYATALVAYNKNRVKRLKAYLDKTEEVKDAA
Ga0209550_101744414	F051686	AGGA	MNRVCDAGGICPHKPQCEHFCHFTNAEVEPEVVRKVKAYPAVPEDIAPMPEVWHNIGAFMLWCIFAVLLTICLALFFTGAWIWSLLI