NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209550_10069056

Scaffold Ga0209550_10069056


Overview

Basic Information
Taxon OID3300027892 Open in IMG/M
Scaffold IDGa0209550_10069056 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2757
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F002387Metagenome / Metatranscriptome565Y
F013414Metagenome / Metatranscriptome271Y
F025671Metagenome / Metatranscriptome200Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209550_100690561F013414AGGCGGMKTPEQKVAEQLVNLTEDHWFNAASLARYITDQPYYTTDRIMELVAQLIRWGGKRHEDELTPSGIYESNTSSEGLFLAHELNKTLNKLIKTYEWENLKLPVDPQKVIAKLPKVEEQSYRYSWVHDTNNGPTANLNVQAVL
Ga0209550_1006905610F025671N/ARGDVKTILEYENRCYACQSFDTLDYCEDDCGEFCSECSQGSWQDEEAMAKCQTHMVLLENTEKAEV
Ga0209550_100690565F033433AGGAVNDVSLEILEVNYSISPGGVDEFEVYSVGPRSNISDLLFSSPKLEEAVRYCYDLGKDFTVRTLAEWEERELAYEARG
Ga0209550_100690566F000263AGGMNNEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDETEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGIRTENRKDGHL
Ga0209550_100690569F002387GAGGMSDPHGIIGKYRKGGGIMSSFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDEFIYAEFNKFYELKEGDEDYLC
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