NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209550_10018636

Scaffold Ga0209550_10018636


Overview

Basic Information
Taxon OID3300027892 Open in IMG/M
Scaffold IDGa0209550_10018636 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6113
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F002387Metagenome / Metatranscriptome565Y
F036238Metagenome170Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209550_100186361F000441AGGAGGMRMSDEYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDRVEQVYN
Ga0209550_100186363F000263AGGMNAEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLVAEQELVDAQDLENETEEAMDSMERTRCEGALDTLTELYQLTYMLSFAIGARDEA
Ga0209550_100186364F063705GGAGGMTKSSQFLEYMKLHLISLNQDWEATKNGEPLNDDEYDPSDDYFEGAIAATEHLLSVATDIMNSTNERYE
Ga0209550_100186367F002387AGGCGGMASFLEDVNQMVIDAVYQDIAEQLLEDWLNNNLDEGQYFADKQFAEMSGDKFIYDEFNKFYNLKEGDEDYLC
Ga0209550_100186369F036238GGCGGMGDRANFGFRQSNGETIVLYGHWAGHQMLSNLADAIAVAEPRWTDESYATRIAISQLVGKEWTSETGWGLSVNRILDNEHKIPIIDWENKTFSLHEEAPWSEDGNNFKVHGMQDEPIFTMTLENFVSKYSSQLSMV
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