Scaffold Ga0209550_10017168

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10017168
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6406
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F015719	Metagenome / Metatranscriptome	252	Y
F029029	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_100171681	F015719	N/A	YYTELDGAEPTVSTQVGGVKYTFTNESLTRLIEEKEQLKIELAQVERKFKSAQFDVREHFQSRYETDSDEIVSEVDDVNSLLVNIGSEGLTKTWSASITITATVTGIEASNKDEAENIIKDNIEVNMTVDGDIWVDDISMESAYPEA
Ga0209550_1001716811	F008296	N/A	LKKDAWVDEYELLVSTLASEYYRKYPVTEAEDIRQVLWVWFLTHPVKYTEWSKLPAKDKERLIARSLRNAALKYCEQEKARKVGYDISDLYYYDPSVIEAFLPSIIGNSYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLAEAKQNILRIKFSVDNYEWNDLGKELDTSADGARMKVNRAIASLIKILGGWRTHSEPDVIETKEESKEHD
Ga0209550_1001716812	F029029	AGAAG	MTEEPKDIRELLNKKDYSKSIDLRGNPIGDICVCGSELFLAIVAFEQGEICFYFLDGECANCGSLVTLSTPIDEHGLDCD