Scaffold Ga0209550_10014667

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10014667
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6986
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003422	Metagenome / Metatranscriptome	487	Y
F005741	Metagenome / Metatranscriptome	391	Y
F019324	Metagenome / Metatranscriptome	230	Y
F020171	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_1001466710	F003422	N/A	MSVGSAIILHMTTYNKYTWVCTGDCDALIEYTIKDGFGWPAGEMNLTCRCNSDCILLSVEDATIPYTDTKLTEEKMDTTTIESDAFHSPAVPYNPDLLVTYKVIKGYSDPEFTTSKVASLEWDLHNGRQSQKSVGVLQDKINVAKDIIAEAYVDSNDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA
Ga0209550_1001466716	F020171	AGGCGG	MEQFIDTLAEHITGAIQQEISEHLFDQWSYNNLESGSDYAEHMFMQFASDELKQQYNEYYGYIEGDEFLL
Ga0209550_1001466717	F019324	GAG	MMLGYSESDLDEMIGAIQAALTTVNSDNDPWLHGNLWKAQEFLQGLWAEGYFDHD
Ga0209550_100146677	F005741	AGGA	MKNRFRVEIYDANKMNDLTIYSEQGVDKEYLTELVISNLRKFSGTVRAYVFDNVKKKKITALILDEAIVSKINVPRKLTSVEIGIR